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2008
Meng, Y., Wen J., Nie Z. L., & Sun H. (2008).  Phylogeny and biogeographic diversification of Maianthemum (Ruscaceae: Polygonatae). (YangY P., Ed.).Molecular Phylogenetics and Evolution. 49,
2007
Yoo, K. O., & Wen J. (2007).  Phylogeny of Carpinus and subfamily Coryloideae (Betulaceae) based on chloroplast and nuclear ribosomal sequence data. Plant Systematics and Evolution. 267,
2006
Wen, J., Nie Z. L., Sun H., Beardsley P. M., & Olmstead R. G. (2006).  Evolution of biogeographic disjunction between eastern Asia and eastern North America in Phryma (Phrymaceae). American Journal of Botany. 93,
Soejima, A., & Wen J. (2006).  Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers. American Journal of Botany. 93,
Soejima, A., & Wen J. (2006).  Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers. American Journal of Botany. 93,
2005
Plunkett, G. M., Lowry II P. P., Frodin D. G., & Wen J. (2005).  Phylogeny and geography of Schefflera: Pervasive polyphyly in the largest genus of Araliaceae. Annals of the Missouri Botanical Garden. 92,
Mitchell, A., & Wen J. (2005).  Phylogeny of Brassaiopsis (Araliaceae) in Asia based on nuclear ITS and 5S-NTS DNA sequences. Systematic Botany. 30,
2004
Yi, T. S., Lowry II P. P., Plunkett G. M., & Wen J. (2004).  Chromosomal evolution in Araliaceae and close relatives. Taxon. 53,
Lowry II, P. P., Plunkett G. M., & Wen J. (2004).  Generic relationships in Araliaceae: looking into the crystal ball. South African Journal of Botany. 70,
Plunkett, G. M., Wen J., & Lowry II P. P. (2004).  Infrafamilial classifications and characters in Araliaceae: Insights from the phylogenetic analysis of nuclear (ITS) and plastid (trnL-trnF) sequence data. Plant Systematics and Evolution. 245,
Lee, C., & Wen J. (2004).  Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol. Phylogen. Evol. . 31,
Wen, J. (2004).  Systematics and biogeography of Araia sect. Dimorphanthu (Miq.) Miq. (Araliaceae). cathaya. 15-16,
2002
Wen, J. (2002).  Revision of Araia sect. Pentapanax (Seem.) J. Wen (Araliaceae). Cathaya. 13-14,
2001
Wen, J., Lowry II P. P., & Esser H. J. (2001).  Aralia kingdon-wardii J. Wen, Lowry & Esser, a new name for an Asian Araliaceae. Adansonia. 23,
Yoo, K. O., Malla K. J., & Wen J. (2001).  Chloroplast DNA variation of Panax (Araliaceae) in Nepal and its taxonomic implications. Brittonia. 53,
Lee, S., & Wen J. (2001).  A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA. American Journal of Botany. 88,
Wen, J. (2001).  Species diversity, nomenclature, phylogeny, bigeography, and classification of the ginseng genus (Panax L., Araliaceae). Utilization of biotechnological, genetic and cultural approaches for North American and Asian ginseng improvement.
2000
Wen, J. (2000).  Internal transcribed spacer phylogeny of the eastern Asian and eastern North American disjunct Aralia sect. Dimorphanthus (Araliaceae) and its biogeographic implications. Intl. J. Pl. Sci.. 161,
1999
Wen, J. (1999).  Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annual Review of Ecology and Systematics. 30,
1996
Wen, J., & Zimmer E. A. (1996).  Phylogeny and biogeography of Panax L. (the ginseng genus, Araliaceae): Inferences from ITS sequences of nuclear ribosomal DNA. Mol. Phylogen. Evol. . 6,
1993
Wen, J. (1993).  Generic delimitation of Aralia L. (Araliaceae). Brittonia. 45,
Wen, J., & Stuessy T. F. (1993).  The Phylogeny and Biogeography of Nyssa (Cornaceae). Systematic Botany. 18,